Treffer: Combining polynomial chaos expansions and genetic algorithm for the coupling of electrophysiological models

Title:
Combining polynomial chaos expansions and genetic algorithm for the coupling of electrophysiological models
Contributors:
Universitat Politècnica de Catalunya. Departament de Física, Universitat Politècnica de Catalunya. BIOCOM-SC - Grup de Biologia Computacional i Sistemes Complexos
Publication Year:
2019
Collection:
Universitat Politècnica de Catalunya, BarcelonaTech: UPCommons - Global access to UPC knowledge
Document Type:
Buch book part
File Description:
14 p.; application/pdf
Language:
English
Relation:
info:eu-repo/grantAgreement/SPAIN/MICINN/SAF2017-88019-C3-2R; http://hdl.handle.net/2117/181704
DOI:
10.1007/978-3-030-22744-9_9
Rights:
Attribution-NonCommercial-NoDerivs 3.0 Spain ; http://creativecommons.org/licenses/by-nc-nd/3.0/es/ ; Open Access
Accession Number:
edsbas.13F0AE7D
Database:
BASE

Weitere Informationen

The number of computational models in cardiac research has grown over the last decades. Every year new models with di erent assumptions appear in the literature dealing with di erences in interspecies cardiac properties. Generally, these new models update the physiological knowledge using new equations which reect better the molecular basis of process. New equations require the fi tting of parameters to previously known experimental data or even, in some cases, simulated data. This work studies and proposes a new method of parameter adjustment based on Polynomial Chaos and Genetic Algorithm to nd the best values for the parameters upon changes in the formulation of ionic channels. It minimizes the search space and the computational cost combining it with a Sensitivity Analysis. We use the analysis of di ferent models of L-type calcium channels to see that by reducing the number of parameters, the quality of the Genetic Algorithm dramatically improves. In addition, we test whether the use of the Polynomial Chaos Expansions improves the process of the Genetic Algorithm search. We conclude that it reduces the Genetic Algorithm execution in an order of 103 times in the case studied here, maintaining the quality of the results. We conclude that polynomial chaos expansions can improve and reduce the cost of parameter adjustment in the development of new models. ; Peer Reviewed ; Postprint (author's final draft)