• Suche: Linear Programming and Integer Linear Programming in Bioinformatics

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1

Accurate Flow Decomposition via Robust Integer Linear Programming
Dias, F.H.C. ; Tomescu, A.I.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 21(6):1955-1964 Jan, 2024

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2

Achieving high cell utilisation via hybrid MILP models using restriction.
Won, Youkyung ; Hwang, Hark-Chin ; Kim, Jinhak
International Journal of Production Research. Dec2025, p1-23. 23p. 5 Illustrations.

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3

A Method for Inferring Polymers Based on Linear Regression and Integer Programming
Ido, R. ; Cao, S. ; Zhu, J. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 21(6):1623-1632 Jan, 2024

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4

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly
Zhao, J. ; Feng, H. ; Zhu, D. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 19(1):48-56 Jan, 2022

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5

CDPath: Cooperative Driver Pathways Discovery Using Integer Linear Programming and Markov Clustering
Yang, Z. ; Yu, G. ; Guo, M. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 18(4):1384-1395 Aug, 2021

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6

Deriving consensus tumor trees using integer linear programming
Smith-Erb, Matthew ; Guang, Ziyun ; Oesper, Layla
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :3882-3883 Dec, 2022

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7

A Mixed Integer Linear Program for Post-translational Modification Characterization
Lai, Shengzhi ; Zhao, Peize ; Li, Ning ; et al.
2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :306-313 Dec, 2024

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8

InteGene: An Integer Linear Programming Tool for Discovering Approximate Gene Clusters
Florendo, Princess Danielle V. ; Solano, Geoffrey A.
2019 10th International Conference on Information, Intelligence, Systems and Applications (IISA) Information, Intelligence, Systems and Applications (IISA), 2019 10th International Conference on. :1-8 Jul, 2019

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9

An Approach of Epistasis Detection Using Integer Linear Programming Optimizing Bayesian Network
Yang, X. ; Yang, C. ; Lei, J. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 19(5):2654-2671 Jan, 2022

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10

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11

A new integer linear programming formulation for the maximum balanced Bi-clique problem.
Ghadiri, Mohammad Javad ; Bagherian, Mehri
Discrete Mathematics, Algorithms & Applications. Sep2025, p1. 18p.

BIPARTITE graphs BIOINFORMATICS PROTEIN-protein interact... MIXED integer linear pro... GENE expression profilin... GRAPH theory
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12

Molecular Design Based on Artificial Neural Networks, Integer Programming and Grid Neighbor Search
Azam, Naveed Ahmed ; Zhu, Jianshen ; Haraguchi, Kazuya ; et al.
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :360-363 Dec, 2021

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13

Strong Optimal Classification Trees.
Aghaei, Sina ; Gómez, Andrés ; Vayanos, Phebe
Operations Research. Jul/Aug2025, Vol. 73 Issue 4, p2223-2241. 19p.

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14

A Novel Method for Inferring Chemical Compounds With Prescribed Topological Substructures Based on Integer Programming
Zhu, J. ; Azam, N.A. ; Zhang, F. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 19(6):3233-3245 Jan, 2022

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15

Traveling salesman problem with drone and bicycle: multimodal last‐mile e‐mobility.
Babaee Tirkolaee, Erfan ; Cakmak, Emre ; Karadayi‐Usta, Saliha
International Transactions in Operational Research. Nov2025, Vol. 32 Issue 6, p3232-3258. 27p.

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16

Cycle-Configuration: A Novel Graph-theoretic Descriptor Set for Molecular Inference
Song, Bowen ; Zhu, Jianshen ; Azam, Naveed Ahmed ; et al.
2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :856-859 Dec, 2024

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17

Accurate Construction of Consensus Genetic Maps via Integer Linear Programming
Wu, Yonghui ; Close, Timothy J. ; Lonardi, Stefano
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 8(2):381-394 Apr, 2011

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18

Compact Models for Some Cluster Problems on Node-Colored Graphs.
Montemanni, Roberto ; Smith, Derek H. ; Luangpaiboon, Pongchanun ; et al.
Algorithms. Dec2025, Vol. 18 Issue 12, p759. 16p.

MIXED integer linear pro... GRAPH coloring GRAPH theory EMPIRICAL research GRAPH algorithms MATHEMATICAL optimizatio... …
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19

Food inspector scheduling with outcome and daily-schedule effects.
Liu, Ming ; Tang, Hao ; Chu, Feng ; et al.
International Journal of Production Research. Feb2024, Vol. 62 Issue 3, p737-766. 30p.

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20

Distributionally robust multi-period humanitarian relief network design integrating facility location, supply inventory and allocation, and evacuation planning.
Yin, Yunqiang ; Wang, Jie ; Chu, Feng ; et al.
International Journal of Production Research. Jan2024, Vol. 62 Issue 1/2, p45-70. 26p.

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