• Suche: Computing for Comparative Microbial Genomics

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1

Invited: Comparative microbial genomics
Narasimhan, Giri
2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) Computational Advances in Bio and Medical Sciences (ICCABS), 2011 IEEE 1st International Conference on. :8-8 Feb, 2011

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2

Microbial genomic island discovery, visualization and analysis.
Bertelli, Claire ; Tilley, Keith E ; Brinkman, Fiona S L
Briefings in Bioinformatics. Sep2019, Vol. 20 Issue 5, p1685-1698. 14p.

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3

Sketched reference databases for genome-based taxonomy and comparative genomics.
Sánchez-Reyes, A. ; Fernández-López, M. G.
Brazilian Journal of Biology. 2024, Vol. 84, p1-7. 7p.

Comparative genomics Databases Genomics Domestic space Proteomics
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4

A computational framework for integrative analysis of large microbial genomics data
Zeng, Erliang ; Zhang, Wei ; Emrich, Scott ; et al.
2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on. :1109-1116 Nov, 2015

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5

Adaptive Attention-Infused Predictive Learning for Scalable Genomic Sequence Compression and Fragment Reconstruction across Noisy Biomedical Repositories
Bhowmik, Angkita ; Sarker, Sowmik ; Al Rakin, Abdullah ; et al.
2025 IEEE Asia Pacific Conference on Wireless and Mobile (APWiMob) Wireless and Mobile (APWiMob), 2025 IEEE Asia Pacific Conference on. :205-211 Nov, 2025

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6

A Hybrid Computational Grid Architecture for Comparative Genomics
Singh, A. ; Chen, C. ; Liu, W. ; et al.
IEEE Transactions on Information Technology in Biomedicine IEEE Trans. Inform. Technol. Biomed. Information Technology in Biomedicine, IEEE Transactions on. 12(2):218-225 Mar, 2008

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7

Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
Markowitz, Victor M. ; Chen, I-Min A. ; Chu, Ken ; et al.
In Trends in Microbiology November 2015 23(11):730-741

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8

Chapter 1.3 - Computational Tools for Whole Genome and Metagenome Analysis of NGS Data for Microbial Diversity Studies
Gouda, Sudhansu Kumar ; Kumari, Khushbu ; Panda, Ananta Narayan ; et al.
In Microbial Diversity in the Genomic Era Edition: Second Edition. 2024:43-71

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9

A grid-based system for microbial genome comparison and analysis
Sun, Y. ; Anil Wipat ; Pocock, M. ; et al.
CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005. Cluster Computing and the Grid Cluster Computing and the Grid, 2005. CCGrid 2005. IEEE International Symposium on. 2:977-984 Vol. 2 2005

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10

Operon prediction in cyanobacteria using comparative genomics
Khuri, N. ; Rao, N.S.
2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05) Computational Systems Bioinformatics Computational Systems Bioinformatics Conference, 2005. Workshops and Poster Abstracts. IEEE. :23-24 2005

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11

Exploring Microbial Genome Sequences to Identify Protein Families on the Grid
Sun, Y. ; Wipat, A. ; Pocock, M. ; et al.
IEEE Transactions on Information Technology in Biomedicine IEEE Trans. Inform. Technol. Biomed. Information Technology in Biomedicine, IEEE Transactions on. 11(4):435-442 Jul, 2007

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12

Reusable tutorials for using cloud-based computing environments for the analysis of bacterial gene expression data from bulk RNA sequencing.
Allers, Steven ; O'Connell, Kyle A ; Carlson, Thad ; et al.
Briefings in Bioinformatics. Jul2024, Vol. 25 Issue 4, p1-12. 12p.

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13

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14

Comparative genomic analysis by microbial COGs self-attraction rate
Santoni, Daniele ; Romano-Spica, Vincenzo
In Journal of Theoretical Biology 2009 258(4):513-520

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15

Computational methods for predicting genomic islands in microbial genomes
Lu, Bingxin ; Leong, Hon Wai
In Computational and Structural Biotechnology Journal 2016 14:200-206

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17

GenomeFingerprinter and universal genome fingerprint analysis for systematic comparative genomics
Ai, Yuncan ; Ai, Hannan ; Meng, Fanmei ; et al.

Quantitative Biology - G... Computer Science - Compu... Mathematics - Numerical...
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18

Augmenting microbial phylogenomic signal with tailored marker gene sets.
Secaira-Morocho, Henry ; Jiang, Xiaofang ; Zhu, Qiyun
Nature Communications; 11/12/2025, Vol. 16 Issue 1, p1-12, 12p

MICROBIAL genomics MICROBIAL diversity METAGENOMICS GENE families SEQUENCE analysis
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19

Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human Microbiota
Blanco, G. ; Sanchez, B. ; Ruiz, L. ; et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 18(6):2302-2313 Jan, 2021

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20

Dynamics of Gut Microbiota in Japanese Tits (Parus minor) Across Developmental Stages: Composition, Diversity, and Associations with Body Condition.
Zhang, Li ; Kang, Lele ; Sun, Keping ; et al.
Microorganisms; Dec2025, Vol. 13 Issue 12, p2840, 16p

GUT microbiota MICROBIAL diversity PHYSIOLOGICAL adaptation BODY composition LIFE history theory MICROBIAL genomics …
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